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Academic Journals Database
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BMC Genomics

Publisher: BioMed Central


Improving the specificity of exon prediction using comparative genomics PDF available
Author(s): Wu Jing
Volume: 9
Issue: Suppl 2
Year: 2008
Batch Blast Extractor: an automated blastx parser application PDF available
Author(s): Pirooznia Mehdi | Perkins Edward | Deng Youping
Volume: 9
Issue: Suppl 2
Year: 2008
ILOOP – a web application for two-channel microarray interwoven loop design PDF available
Author(s): Pirooznia Mehdi | Gong Ping | Yang Jack | Yang Mary | Perkins Edward | Deng Youping
Volume: 9
Issue: Suppl 2
Year: 2008
Approaches to reduce false positives and false negatives in the analysis of microarray data: applications in type 1 diabetes research PDF available
Author(s): Wu Jian | Lenchik Nataliya | Gerling Ivan
Volume: 9
Issue: Suppl 2
Year: 2008
A stable iterative method for refining discriminative gene clusters PDF available
Author(s): Xu Min | Zhu Mengxia | Zhang Louxin
Volume: 9
Issue: Suppl 2
Year: 2008
Inferring gene regulatory networks by thermodynamic modeling PDF available
Author(s): Chen Chieh-Chun | Zhong Sheng
Volume: 9
Issue: Suppl 2
Year: 2008
The FEATURE framework for protein function annotation: modeling new functions, improving performance, and extending to novel applications PDF available
Author(s): Halperin Inbal | Glazer Dariya | Wu Shirley | Altman Russ
Volume: 9
Issue: Suppl 2
Year: 2008
MeDor: a metaserver for predicting protein disorder PDF available
Author(s): Lieutaud Philippe | Canard Bruno | Longhi Sonia
Volume: 9
Issue: Suppl 2
Year: 2008
Short Linear Motifs recognized by SH2, SH3 and Ser/Thr Kinase domains are conserved in disordered protein regions PDF available
Author(s): Ren Siyuan | Uversky Vladimir | Chen Zhengjun | Dunker A Keith | Obradovic Zoran
Volume: 9
Issue: Suppl 2
Year: 2008
Gene selection algorithm by combining reliefF and mRMR PDF available
Author(s): Zhang Yi | Ding Chris | Li Tao
Volume: 9
Issue: Suppl 2
Year: 2008
Diversity of core promoter elements comprising human bidirectional promoters PDF available
Author(s): Yang Mary | Elnitski Laura
Volume: 9
Issue: Suppl 2
Year: 2008
Protein intrinsic disorder toolbox for comparative analysis of viral proteins PDF available
Author(s): Goh Gerard | Dunker A Keith | Uversky Vladimir
Volume: 9
Issue: Suppl 2
Year: 2008
Biomarker discovery across annotated and unannotated microarray datasets using semi-supervised learning PDF available
Author(s): Harris Cole | Ghaffari Noushin
Volume: 9
Issue: Suppl 2
Year: 2008
Predicting protein disorder by analyzing amino acid sequence PDF available
Author(s): Yang Jack | Yang Mary
Volume: 9
Issue: Suppl 2
Year: 2008
Genomics, molecular imaging, bioinformatics, and bio-nano-info integration are synergistic components of translational medicine and personalized healthcare research PDF available
Author(s): Yang Jack | Yang Mary | Arabnia Hamid | Deng Youping
Volume: 9
Issue: Suppl 2
Year: 2008
The unfoldomics decade: an update on intrinsically disordered proteins PDF available
Author(s): Dunker A Keith | Oldfield Christopher | Meng Jingwei | Romero Pedro | Yang Jack | Chen Jessica | Vacic Vladimir | Obradovic Zoran | Uversky Vladimir
Volume: 9
Issue: Suppl 2
Year: 2008
Selecting informative genes for discriminant analysis using multigene expression profiles PDF available
Author(s): Yan Xin | Zheng Tian
Volume: 9
Issue: Suppl 2
Year: 2008
Phylogenetic reconstruction from transpositions PDF available
Author(s): Yue Feng | Zhang Meng | Tang Jijun
Volume: 9
Issue: Suppl 2
Year: 2008
Use artificial neural network to align biological ontologies PDF available
Author(s): Huang Jingshan | Dang Jiangbo | Huhns Michael | Zheng W Jim
Volume: 9
Issue: Suppl 2
Year: 2008
Array CGH data modeling and smoothing in Stationary Wavelet Packet Transform domain PDF available
Author(s): Huang Heng | Nguyen Nha | Oraintara Soontorn | Vo An
Volume: 9
Issue: Suppl 2
Year: 2008
Extending bicluster analysis to annotate unclassified ORFs and predict novel functional modules using expression data PDF available
Author(s): Bryan Kenneth | Cunningham Pádraig
Volume: 9
Issue: Suppl 2
Year: 2008
Tumor classification ranking from microarray data PDF available
Author(s): Hewett Rattikorn | Kijsanayothin Phongphun
Volume: 9
Issue: Suppl 2
Year: 2008
Transcription factor and microRNA regulation in androgen-dependent and -independent prostate cancer cells PDF available
Author(s): Wang Guohua | Wang Yadong | Feng Weixing | Wang Xin | Yang Jack | Zhao Yuming | Wang Yue | Liu Yunlong
Volume: 9
Issue: Suppl 2
Year: 2008
A Poisson mixture model to identify changes in RNA polymerase II binding quantity using high-throughput sequencing technology PDF available
Author(s): Feng Weixing | Liu Yunlong | Wu Jiejun | Nephew Kenneth | Huang Tim | Li Lang
Volume: 9
Issue: Suppl 2
Year: 2008
Selecting subsets of newly extracted features from PCA and PLS in microarray data analysis PDF available
Author(s): Li Guo-Zheng | Bu Hua-Long | Yang Mary | Zeng Xue-Qiang | Yang Jack
Volume: 9
Issue: Suppl 2
Year: 2008
Assessment of data processing to improve reliability of microarray experiments using genomic DNA reference PDF available
Author(s): Yang Yunfeng | Zhu Mengxia | Wu Liyou | Zhou Jizhong
Volume: 9
Issue: Suppl 2
Year: 2008
In silico comparison of transcript abundances during Arabidopsis thaliana and Glycine max resistance to Fusarium virguliforme PDF available
Author(s): Yuan Jiazheng | Zhu Mengxia | Lightfoot David | Iqbal M Javed | Yang Jack | Meksem Khalid
Volume: 9
Issue: Suppl 2
Year: 2008
Analyzing adjuvant radiotherapy suggests a non monotonic radio-sensitivity over tumor volumes PDF available
Author(s): Yang Jack | Niemierko Andrzej | Yang Mary | Deng Youping
Volume: 9
Issue: Suppl 2
Year: 2008
Semantically linking and browsing PubMed abstracts with gene ontology
Author(s): Vanteru Bhanu | Shaik Jahangheer | Yeasin Mohammed
Volume: 9
Issue: Suppl 1
Year: 2008
Selection of thermodynamic models for combinatorial control of multiple transcription factors in early differentiation of embryonic stem cells
Author(s): Chen Chieh-Chun | Zhu Xin-Guang | Zhong Sheng
Volume: 9
Issue: Suppl 1
Year: 2008
Identification of transcription factor and microRNA binding sites in responsible to fetal alcohol syndrome
Author(s): Wang Guohua | Wang Xin | Wang Yadong | Yang Jack | Li Lang | Nephew Kenneth | Edenberg Howard | Zhou Feng | Liu Yunlong
Volume: 9
Issue: Suppl 1
Year: 2008
Flexible nets: disorder and induced fit in the associations of p53 and 14-3-3 with their partners
Author(s): Oldfield Christopher | Meng Jingwei | Yang Jack | Yang Mary Qu | Uversky Vladimir | Dunker A Keith
Volume: 9
Issue: Suppl 1
Year: 2008
Using RNase sequence specificity to refine the identification of RNA-protein binding regions
Author(s): Wang Xin | Wang Guohua | Shen Changyu | Li Lang | Wang Xinguo | Mooney Sean | Edenberg Howard | Sanford Jeremy | Liu Yunlong
Volume: 9
Issue: Suppl 1
Year: 2008
HMMEditor: a visual editing tool for profile hidden Markov model
Author(s): Dai Jianyong | Cheng Jianlin
Volume: 9
Issue: Suppl 1
Year: 2008
Promoting synergistic research and education in genomics and bioinformatics
Author(s): Yang Jack | Yang Mary Qu | Zhu Mengxia (Michelle) | Arabnia Hamid | Deng Youping
Volume: 9
Issue: Suppl 1
Year: 2008
Characterization of the Shewanella oneidensis Fur gene: roles in iron and acid tolerance response
Author(s): Yang Yunfeng | Harris Daniel | Luo Feng | Wu Liyou | Parsons Andrea | Palumbo Anthony | Zhou Jizhong
Volume: 9
Issue: Suppl 1
Year: 2008
An integrative approach to characterize disease-specific pathways and their coordination: a case study in cancer
Author(s): Xu Min | Kao Ming-Chih | Nunez-Iglesias Juan | Nevins Joseph | West Mike | Zhou Xianghong Jasmine
Volume: 9
Issue: Suppl 1
Year: 2008
A comparative study of different machine learning methods on microarray gene expression data
Author(s): Pirooznia Mehdi | Yang Jack | Yang Mary Qu | Deng Youping
Volume: 9
Issue: Suppl 1
Year: 2008
Transcriptome profiling of Saccharomyces cerevisiae mutants lacking C2H2 zinc finger proteins
Author(s): Mao Jinghe | Habib Tanwir | Shenwu Ming | Kang Baobin | Allen Wilbur | Robertson LaShonda | Yang Jack | Deng Youping
Volume: 9
Issue: Suppl 1
Year: 2008
Transcriptomic analysis of RDX and TNT interactive sublethal effects in the earthworm Eisenia fetida
Author(s): Gong Ping | Guan Xin | Inouye Laura | Deng Youping | Pirooznia Mehdi | Perkins Edward
Volume: 9
Issue: Suppl 1
Year: 2008
Supervised learning method for the prediction of subcellular localization of proteins using amino acid and amino acid pair composition
Author(s): Habib Tanwir | Zhang Chaoyang | Yang Jack | Yang Mary Qu | Deng Youping
Volume: 9
Issue: Suppl 1
Year: 2008
Prediction-based approaches to characterize bidirectional promoters in the mammalian genome
Author(s): Yang Mary Qu | Elnitski Laura
Volume: 9
Issue: Suppl 1
Year: 2008
xMAN: extreme MApping of OligoNucleotides
Author(s): Li Wei | Carroll Jason | Brown Myles | Liu X Shirley
Volume: 9
Issue: Suppl 1
Year: 2008
Stability analysis of genetic regulatory network with additive noises
Author(s): Jin Yufang | Lindsey Merry
Volume: 9
Issue: Suppl 1
Year: 2008
Efficient non-unique probes selection algorithms for DNA microarray
Author(s): Deng Ping | Thai My | Ma Qingkai | Wu Weili
Volume: 9
Issue: Suppl 1
Year: 2008
A hybrid machine learning-based method for classifying the Cushing's Syndrome with comorbid adrenocortical lesions
Author(s): Yang Jack | Yang Mary Qu | Luo Zuojie | Ma Yan | Li Jianling | Deng Youping | Huang Xudong
Volume: 9
Issue: Suppl 1
Year: 2008
Algorithms to estimate the lower bounds of recombination with or without recurrent mutations
Author(s): Liu Xiaoming | Fu Yun-Xin
Volume: 9
Issue: Suppl 1
Year: 2008
Gene rearrangement analysis and ancestral order inference from chloroplast genomes with inverted repeat
Author(s): Yue Feng | Cui Liying | dePamphilis Claude | Moret Bernard | Tang Jijun
Volume: 9
Issue: Suppl 1
Year: 2008
Improving prediction accuracy of tumor classification by reusing genes discarded during gene selection
Author(s): Yang Jack | Li Guo-Zheng | Meng Hao-Hua | Yang Mary | Deng Youping
Volume: 9
Issue: Suppl 1
Year: 2008
Bayesian biclustering of gene expression data
Author(s): Gu Jiajun | Liu Jun
Volume: 9
Issue: Suppl 1
Year: 2008
Transcription network construction for large-scale microarray datasets using a high-performance computing approach
Author(s): Zhu Mengxia (Michelle) | Wu Qishi
Volume: 9
Issue: Suppl 1
Year: 2008
Supervised learning-based tagSNP selection for genome-wide disease classifications
Author(s): Liu Qingzhong | Yang Jack | Chen Zhongxue | Yang Mary Qu | Sung Andrew | Huang Xudong
Volume: 9
Issue: Suppl 1
Year: 2008
Investigation of transmembrane proteins using a computational approach
Author(s): Yang Jack | Yang Mary | Dunker A Keith | Deng Youping | Huang Xudong
Volume: 9
Issue: Suppl 1
Year: 2008
Protein disorder prediction at multiple levels of sensitivity and specificity
Author(s): Hecker Joshua | Yang Jack | Cheng Jianlin
Volume: 9
Issue: Suppl 1
Year: 2008
Comparative phylogenomic analyses of teleost fish Hox gene clusters: lessons from the cichlid fish Astatotilapia burtoni: comment
Author(s): Thomas-Chollier Morgane | Ledent Valérie
Volume: 9
Issue: 1
Year: 2008
Genome-wide analysis of antisense transcription with Affymetrix exon array
Author(s): Ge Xijin | Rubinstein Wendy | Jung Yong-chul | Wu Qingfa
Volume: 9
Issue: 1
Year: 2008
Coral life history and symbiosis: Functional genomic resources for two reef building Caribbean corals, Acropora palmata and Montastraea faveolata
Author(s): Schwarz Jodi | Brokstein Peter | Voolstra Christian | Terry Astrid | Manohar Chitra | Miller David | Szmant Alina | Coffroth Mary | Medina Mónica
Volume: 9
Issue: 1
Year: 2008
The complete mitochondrial genome sequence of the hydrothermal vent galatheid crab Shinkaia crosnieri (Crustacea: Decapoda: Anomura): A novel arrangement and incomplete tRNA suite
Author(s): Yang Jin-Shu | Nagasawa Hiromichi | Fujiwara Yoshihiro | Tsuchida Shinji | Yang Wei-Jun
Volume: 9
Issue: 1
Year: 2008
Uncovering rate variation of lateral gene transfer during bacterial genome evolution
Author(s): Hao Weilong | Golding G Brian
Volume: 9
Issue: 1
Year: 2008
Fungal cytochrome P450 database
Author(s): Park Jongsun | Lee Seungmin | Choi Jaeyoung | Ahn Kyohun | Park Bongsoo | Park Jaejin | Kang Seogchan | Lee Yong-Hwan
Volume: 9
Issue: 1
Year: 2008
Multiple actions of lysophosphatidic acid on fibroblasts revealed by transcriptional profiling
Author(s): Stortelers Catelijne | Kerkhoven Ron | Moolenaar Wouter
Volume: 9
Issue: 1
Year: 2008
Identification of drought-responsive genes in roots of upland rice (Oryza sativa L)
Author(s): Rabello Aline | Guimarães Cléber | Rangel Paulo | da Silva Felipe | Seixas Daniela | de Souza Emanuel | Brasileiro Ana | Spehar Carlos | Ferreira Márcio | Mehta Ângela
Volume: 9
Issue: 1
Year: 2008
ProSeeK: A web server for MLPA probe design
Author(s): Pantano Lorena | Armengol Lluís | Villatoro Sergi | Estivill Xavier
Volume: 9
Issue: 1
Year: 2008
LRRCE: a leucine-rich repeat cysteine capping motif unique to the chordate lineage
Author(s): Park Hosil | Huxley-Jones Julie | Boot-Handford Ray | Bishop Paul | Attwood Teresa | Bella Jordi
Volume: 9
Issue: 1
Year: 2008
Differential RelA- and RelB-dependent gene transcription in LTβR-stimulated mouse embryonic fibroblasts
Author(s): Lovas Agnes | Radke Dörte | Albrecht Daniela | Yilmaz Z Buket | Möller Ulrich | Habenicht Andreas | Weih Falk
Volume: 9
Issue: 1
Year: 2008
OpenADAM: an open source genome-wide association data management system for Affymetrix SNP arrays
Author(s): Yeung J | Sham P | Chan A | Cherny S
Volume: 9
Issue: 1
Year: 2008
Prediction of alternatively skipped exons and splicing enhancers from exon junction arrays
Author(s): Kechris Katerina | Yang Yee | Yeh Ru-Fang
Volume: 9
Issue: 1
Year: 2008
Halibut mitochondrial genomes contain extensive heteroplasmic tandem repeat arrays involved in DNA recombination
Author(s): Mjelle Kenneth | Karlsen Bård | Jørgensen Tor | Moum Truls | Johansen Steinar
Volume: 9
Issue: 1
Year: 2008
Insertion Sequences show diverse recent activities in Cyanobacteria and Archaea
Author(s): Zhou Fengfeng | Olman Victor | Xu Ying
Volume: 9
Issue: 1
Year: 2008
Sub-grouping and sub-functionalization of the RIFIN multi-copy protein family
Author(s): Joannin Nicolas | Abhiman Saraswathi | Sonnhammer Erik | Wahlgren Mats
Volume: 9
Issue: 1
Year: 2008
New miRNAs cloned from neuroblastoma
Author(s): Afanasyeva Elena | Hotz-Wagenblatt Agnes | Glatting Karl-Heinz | Westermann Frank
Volume: 9
Issue: 1
Year: 2008
Hidden layers of human small RNAs
Author(s): Kawaji Hideya | Nakamura Mari | Takahashi Yukari | Sandelin Albin | Katayama Shintaro | Fukuda Shiro | Daub Carsten | Kai Chikatoshi | Kawai Jun | Yasuda Jun | Carninci Piero | Hayashizaki Yoshihide
Volume: 9
Issue: 1
Year: 2008
Analysis of the distribution of functionally relevant rare codons
Author(s): Widmann Michael | Clairo Marie | Dippon Jürgen | Pleiss Jürgen
Volume: 9
Issue: 1
Year: 2008
Altered gene expression in the superior temporal gyrus in schizophrenia
Author(s): Bowden Nikola | Scott Rodney | Tooney Paul
Volume: 9
Issue: 1
Year: 2008
Biocomputational prediction of small non-coding RNAs in Streptomyces
Author(s): Pánek Josef | Bobek Jan | Mikulík Karel | Basler Marek | Vohradský Jiří
Volume: 9
Issue: 1
Year: 2008
Predicting prognosis using molecular profiling in estrogen receptor-positive breast cancer treated with tamoxifen
Author(s): Loi Sherene | Haibe-Kains Benjamin | Desmedt Christine | Wirapati Pratyaksha | Lallemand Françoise | Tutt Andrew | Gillet Cheryl | Ellis Paul | Ryder Kenneth | Reid James | Daidone Maria | Pierotti Marco | Berns Els | Jansen Maurice | Foekens John | Delorenzi Mauro | Bontempi Gianluca | Piccart Martine | Sotiriou Christos
Volume: 9
Issue: 1
Year: 2008
Mining small RNA structure elements in untranslated regions of human and mouse mRNAs using structure-based alignment
Author(s): Khaladkar Mugdha | Liu Jianghui | Wen Dongrong | Wang Jason | Tian Bin
Volume: 9
Issue: 1
Year: 2008
Evolutionary origin of regulatory regions of retrogenes in Drosophila
Author(s): Bai Yongsheng | Casola Claudio | Betrán Esther
Volume: 9
Issue: 1
Year: 2008
A universal DNA mini-barcode for biodiversity analysis
Author(s): Meusnier Isabelle | Singer Gregory | Landry Jean-François | Hickey Donal | Hebert Paul | Hajibabaei Mehrdad
Volume: 9
Issue: 1
Year: 2008
The patatin-like lipase family in Gallus gallus
Author(s): Saarela Jani | Jung Gerlinde | Hermann Marcela | Nimpf Johannes | Schneider Wolfgang
Volume: 9
Issue: 1
Year: 2008
Activation of peroxisome proliferator-activated receptor alpha in human peripheral blood mononuclear cells reveals an individual gene expression profile response
Author(s): Bouwens Mark | Afman Lydia | Müller Michael
Volume: 9
Issue: 1
Year: 2008
Between-groups within-gene heterogeneity of residual variances in microarray gene expression data
Author(s): Casellas Joaquim | Varona Luis
Volume: 9
Issue: 1
Year: 2008
Codon usage suggests that translational selection has a major impact on protein expression in trypanosomatids
Author(s): Horn David
Volume: 9
Issue: 1
Year: 2008
SNPExpress: integrated visualization of genome-wide genotypes, copy numbers and gene expression levels
Author(s): Sanders Mathijs | Verhaak Roel | Geertsma-Kleinekoort Wendy | Abbas Saman | Horsman Sebastiaan | van der Spek Peter | Löwenberg Bob | Valk Peter
Volume: 9
Issue: 1
Year: 2008
Repeats and EST analysis for new organisms
Author(s): Malde Ketil | Jonassen Inge
Volume: 9
Issue: 1
Year: 2008
Virulence factor rtx in Legionella pneumophila, evidence suggesting it is a modular multifunctional protein
Author(s): D'Auria Giuseppe | Jiménez Núria | Peris-Bondia Francesc | Pelaz Carmen | Latorre Amparo | Moya Andrés
Volume: 9
Issue: 1
Year: 2008
Analysis of the retinal gene expression profile after hypoxic preconditioning identifies candidate genes for neuroprotection
Author(s): Thiersch Markus | Raffelsberger Wolfgang | Frigg Rico | Samardzija Marijana | Wenzel Andreas | Poch Olivier | Grimm Christian
Volume: 9
Issue: 1
Year: 2008
A genome-wide SNP panel for mapping and association studies in the rat
Author(s): Nijman Isaäc | Kuipers Sylvia | Verheul Mark | Guryev Victor | Cuppen Edwin
Volume: 9
Issue: 1
Year: 2008
Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice
Author(s): Wang Dong | Guo Yinghui | Wu Changai | Yang Guodong | Li Yingying | Zheng Chengchao
Volume: 9
Issue: 1
Year: 2008
Accounting for one-channel depletion improves missing value imputation in 2-dye microarray data
Author(s): Ritz Cecilia | Edén Patrik
Volume: 9
Issue: 1
Year: 2008
Large-scale analysis of Macaca fascicularis transcripts and inference of genetic divergence between M. fascicularis and M. mulatta
Author(s): Osada Naoki | Hashimoto Katsuyuki | Kameoka Yosuke | Hirata Makoto | Tanuma Reiko | Uno Yasuhiro | Inoue Itsuro | Hida Munetomo | Suzuki Yutaka | Sugano Sumio | Terao Keiji | Kusuda Jun | Takahashi Ichiro
Volume: 9
Issue: 1
Year: 2008
Comparative genomics-based investigation of resequencing targets in Vibrio fischeri: Focus on point miscalls and artefactual expansions
Author(s): Mandel Mark | Stabb Eric | Ruby Edward
Volume: 9
Issue: 1
Year: 2008
An anatomy ontology to represent biological knowledge in Dictyostelium discoideum
Author(s): Gaudet Pascale | Williams Jeffery | Fey Petra | Chisholm Rex
Volume: 9
Issue: 1
Year: 2008
Comparative genomic analysis of Mycobacterium avium subspecies obtained from multiple host species
Author(s): Paustian Michael | Zhu Xiaochun | Sreevatsan Srinand | Robbe-Austerman Suelee | Kapur Vivek | Bannantine John
Volume: 9
Issue: 1
Year: 2008
An indicator of cancer: downregulation of Monoamine Oxidase-A in multiple organs and species
Author(s): Rybaczyk Leszek | Bashaw Meredith | Pathak Dorothy | Huang Kun
Volume: 9
Issue: 1
Year: 2008
Evolution of the hepcidin gene in primates
Author(s): Segat Ludovica | Pontillo Alessandra | Milanese Michele | Tossi Alessandro | Crovella Sergio
Volume: 9
Issue: 1
Year: 2008
Dissecting microregulation of a master regulatory network
Author(s): Sinha Amit | Kaimal Vivek | Chen Jing | Jegga Anil
Volume: 9
Issue: 1
Year: 2008
Deep Sequencing of Chicken microRNAs
Author(s): Burnside Joan | Ouyang Ming | Anderson Amy | Bernberg Erin | Lu Cheng | Meyers Blake | Green Pamela | Markis Milos | Isaacs Grace | Huang Emily | Morgan Robin
Volume: 9
Issue: 1
Year: 2008
A gene sets approach for identifying prognostic gene signatures for outcome prediction
Author(s): Kim Seon-Young | Kim Yong Sung
Volume: 9
Issue: 1
Year: 2008
A software framework for microarray and gene expression object model (MAGE-OM) array design annotation
Author(s): Qureshi Matloob | Ivens Alasdair
Volume: 9
Issue: 1
Year: 2008
The SWI/SNF protein ATRX co-regulates pseudoautosomal genes that have translocated to autosomes in the mouse genome
Author(s): Levy Michael | Fernandes Andrew | Tremblay Deanna | Seah Claudia | Bérubé Nathalie
Volume: 9
Issue: 1
Year: 2008
Unassigned MURF1 of kinetoplastids codes for NADH dehydrogenase subunit 2
Author(s): Kannan Sivakumar | Burger Gertraud
Volume: 9
Issue: 1
Year: 2008
Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A
Author(s): Salzberg Steven | Sommer Daniel | Schatz Michael | Phillippy Adam | Rabinowicz Pablo | Tsuge Seiji | Furutani Ayako | Ochiai Hirokazu | Delcher Arthur | Kelley David | Madupu Ramana | Puiu Daniela | Radune Diana | Shumway Martin | Trapnell Cole | Aparna Gudlur | Jha Gopaljee | Pandey Alok | Patil Prabhu | Ishihara Hiromichi | Meyer Damien | Szurek Boris | Verdier Valerie | Koebnik Ralf | Dow J Maxwell | Ryan Robert | Hirata Hisae | Tsuyumu Shinji | Lee Sang | Seo Young-Su | Sriariyanum Malinee | Ronald Pamela | Sonti Ramesh | Van Sluys Marie-Anne | Leach Jan | White Frank | Bogdanove Adam
Volume: 9
Issue: 1
Year: 2008
Identifying Positioned Nucleosomes with Epigenetic Marks in Human from ChIP-Seq
Author(s): Zhang Yong | Shin Hyunjin | Song Jun | Lei Ying | Liu X Shirley
Volume: 9
Issue: 1
Year: 2008
Differential replication dynamics for large and small Vibrio chromosomes affect gene dosage, expression and location
Author(s): Dryselius Rikard | Izutsu Kaori | Honda Takeshi | Iida Tetsuya
Volume: 9
Issue: 1
Year: 2008
Recent CR1 non-LTR retrotransposon activity in coscoroba reveals an insertion site preference
Author(s): St John Judy | Quinn Thomas
Volume: 9
Issue: 1
Year: 2008
Dissecting an alternative splicing analysis workflow for GeneChip® Exon 1.0 ST Affymetrix arrays
Author(s): Della Beffa Cristina | Cordero Francesca | Calogero Raffaele
Volume: 9
Issue: 1
Year: 2008
Resequencing microarray probe design for typing genetically diverse viruses: human rhinoviruses and enteroviruses
Author(s): Wang Zheng | Malanoski Anthony | Lin Baochuan | Kidd Carolyn | Long Nina | Blaney Kate | Thach Dzung | Tibbetts Clark | Stenger David
Volume: 9
Issue: 1
Year: 2008
A toolbox for epitope-tagging and genome-wide location analysis in Candida albicans
Author(s): Lavoie Hugo | Sellam Adnane | Askew Christopher | Nantel André | Whiteway Malcolm
Volume: 9
Issue: 1
Year: 2008
Global analysis of aberrant pre-mRNA splicing in glioblastoma using exon expression arrays
Author(s): Cheung Hannah | Baggerly Keith | Tsavachidis Spiridon | Bachinski Linda | Neubauer Valerie | Nixon Tamara | Aldape Kenneth | Cote Gilbert | Krahe Ralf
Volume: 9
Issue: 1
Year: 2008
How Athila retrotransposons survive in the Arabidopsis genome
Author(s): Marco Antonio | Marín Ignacio
Volume: 9
Issue: 1
Year: 2008
Improved microarray gene expression profiling of virus-infected cells after removal of viral RNA
Author(s): Raaben Matthijs | Whitley Penn | Bouwmeester Diane | Setterquist Robert | Rottier Peter | de Haan Cornelis
Volume: 9
Issue: 1
Year: 2008
Venezuelan equine encephalitis virus infection causes modulation of inflammatory and immune response genes in mouse brain
Author(s): Sharma Anuj | Bhattacharya Bhaskar | Puri Raj | Maheshwari Radha
Volume: 9
Issue: 1
Year: 2008
A physical map of human Alu repeats cleavage by restriction endonucleases
Author(s): Abdurashitov Murat | Tomilov Victor | Chernukhin Valery | Degtyarev Sergey
Volume: 9
Issue: 1
Year: 2008
The Hypocrea jecorina (Trichoderma reesei) hypercellulolytic mutant RUT C30 lacks a 85 kb (29 gene-encoding) region of the wild-type genome
Author(s): Seidl Verena | Gamauf Christian | Druzhinina Irina | Seiboth Bernhard | Hartl Lukas | Kubicek Christian
Volume: 9
Issue: 1
Year: 2008
PRFdb: A database of computationally predicted eukaryotic programmed -1 ribosomal frameshift signals
Author(s): Belew Ashton | Hepler Nicholas | Jacobs Jonathan | Dinman Jonathan
Volume: 9
Issue: 1
Year: 2008
Conserved upstream open reading frames in higher plants
Author(s): Tran Michael | Schultz Carolyn | Baumann Ute
Volume: 9
Issue: 1
Year: 2008
Evidence of the role of tick subolesin in gene expression
Author(s): de la Fuente José | Maritz-Olivier Christine | Naranjo Victoria | Ayoubi Patricia | Nijhof Ard | Almazán Consuelo | Canales Mario | de la Lastra José | Galindo Ruth | Blouin Edmour | Gortazar Christian | Jongejan Frans | Kocan Katherine
Volume: 9
Issue: 1
Year: 2008
Comparison of prognostic gene expression signatures for breast cancer
Author(s): Haibe-Kains Benjamin | Desmedt Christine | Piette Fanny | Buyse Marc | Cardoso Fatima | van't Veer Laura | Piccart Martine | Bontempi Gianluca | Sotiriou Christos
Volume: 9
Issue: 1
Year: 2008
Sequence conservation and combinatorial complexity of Drosophila neural precursor cell enhancers
Author(s): Brody Thomas | Rasband Wayne | Baler Kevin | Kuzin Alexander | Kundu Mukta | Odenwald Ward
Volume: 9
Issue: 1
Year: 2008
Complete genome of Phenylobacterium zucineum – a novel facultative intracellular bacterium isolated from human erythroleukemia cell line K562
Author(s): Luo Yingfeng | Xu Xiaoli | Ding Zonghui | Liu Zhen | Zhang Bing | Yan Zhiyu | Sun Jie | Hu Songnian | Hu Xun
Volume: 9
Issue: 1
Year: 2008
Genome-wide subcellular localization of putative outer membrane and extracellular proteins in Leptospira interrogansserovar Lai genome using bioinformatics approaches
Author(s): Viratyosin Wasna | Ingsriswang Supawadee | Pacharawongsakda Eakasit | Palittapongarnpim Prasit
Volume: 9
Issue: 1
Year: 2008
WebScipio: An online tool for the determination of gene structures using protein sequences
Author(s): Odronitz Florian | Pillmann Holger | Keller Oliver | Waack Stephan | Kollmar Martin
Volume: 9
Issue: 1
Year: 2008
Novel genome polymorphisms in BCG vaccine strains and impact on efficacy
Author(s): Leung Andrea | Tran Vanessa | Wu Zuowei | Yu Xuping | Alexander David | Gao George | Zhu Baoli | Liu Jun
Volume: 9
Issue: 1
Year: 2008
Multiple displacement amplification for complex mixtures of DNA fragments
Author(s): Shoaib Muhammad | Baconnais Sonia | Mechold Undine | Le Cam Eric | Lipinski Marc | Ogryzko Vasily
Volume: 9
Issue: 1
Year: 2008
Identification of genes and pathways associated with aluminum stress and tolerance using transcriptome profiling of wheat near-isogenic lines
Author(s): Houde Mario | Diallo Amadou
Volume: 9
Issue: 1
Year: 2008
Gene organization, evolution and expression of the microtubule-associated protein ASAP (MAP9)
Author(s): Venoux Magali | Delmouly Karine | Milhavet Ollivier | Vidal-Eychenié Sophie | Giorgi Dominique | Rouquier Sylvie
Volume: 9
Issue: 1
Year: 2008
Haplotype block partitioning as a tool for dimensionality reduction in SNP association studies
Author(s): Pattaro Cristian | Ruczinski Ingo | Fallin Danièle | Parmigiani Giovanni
Volume: 9
Issue: 1
Year: 2008
Human MLPA Probe Design (H-MAPD): a probe design tool for both electrophoresis-based and bead-coupled human multiplex ligation-dependent probe amplification assays
Author(s): Zhi Jizu | Hatchwell Eli
Volume: 9
Issue: 1
Year: 2008
Detection of genome-wide polymorphisms in the AT-rich Plasmodium falciparum genome using a high-density microarray
Author(s): Jiang Hongying | Yi Ming | Mu Jianbing | Zhang Louie | Ivens Al | Klimczak Leszek | Huyen Yentram | Stephens Robert | Su Xin-zhuan
Volume: 9
Issue: 1
Year: 2008
Short Tandem Repeats in Human Exons: A Target for Disease Mutations
Author(s): Madsen Bo | Villesen Palle | Wiuf Carsten
Volume: 9
Issue: 1
Year: 2008
The genomic distribution of intraspecific and interspecific sequence divergence of human segmental duplications relative to human/chimpanzee chromosomal rearrangements
Author(s): Marques-Bonet Tomàs | Cheng Ze | She Xinwei | Eichler Evan | Navarro Arcadi
Volume: 9
Issue: 1
Year: 2008
Partial duplication of the PRLR and SPEF2 genes at the late feathering locus in chicken
Author(s): Elferink Martin | Vallée Amélie | Jungerius Annemieke | Crooijmans Richard | Groenen Martien
Volume: 9
Issue: 1
Year: 2008
Catalogue of epidermal genes: Genes expressed in the epidermis during larval molt of the silkworm Bombyx mori
Author(s): Okamoto Shun | Futahashi Ryo | Kojima Tetsuya | Mita Kazuei | Fujiwara Haruhiko
Volume: 9
Issue: 1
Year: 2008
Gene networks driving bovine milk fat synthesis during the lactation cycle
Author(s): Bionaz Massimo | Loor Juan
Volume: 9
Issue: 1
Year: 2008
Comparison of the Agilent, ROMA/NimbleGen and Illumina platforms for classification of copy number alterations in human breast tumors
Author(s): Baumbusch LO | Aarøe J | Johansen FE | Hicks J | Sun H | Bruhn L | Gunderson K | Naume B | Kristensen VN | Liestøl K | Børresen-Dale A-L | Lingjærde OC
Volume: 9
Issue: 1
Year: 2008
Differential screening identifies transcripts with depot-dependent expression in white adipose tissues
Author(s): Wu Yu | Kim Ji | Zhou Shengli | Smas Cynthia
Volume: 9
Issue: 1
Year: 2008
Hepatocyte RXRalpha deficiency in matured and aged mice: impact on the expression of cancer-related hepatic genes in a gender-specific manner
Author(s): Guo Minglei | Gong Lei | He Lin | Lehman-McKeeman Lois | Wan Yu-Jui
Volume: 9
Issue: 1
Year: 2008
Deciphering the genetic basis for polyketide variation among mycobacteria producing mycolactones
Author(s): Pidot Sacha | Hong Hui | Seemann Torsten | Porter Jessica | Yip Marcus | Men Artem | Johnson Matthew | Wilson Peter | Davies John | Leadlay Peter | Stinear Timothy
Volume: 9
Issue: 1
Year: 2008
Evaluation of human gene variant detection in amplicon pools by the GS-FLX parallel Pyrosequencer
Author(s): Bordoni Roberta | Bonnal Raoul | Rizzi Ermanno | Carrera Paola | Benedetti Sara | Cremonesi Laura | Stenirri Stefania | Colombo Alessio | Montrasio Cristina | Bonalumi Sara | Albertini Alberto | Bernardi Luigi | Ferrari Maurizio | De Bellis Gianluca
Volume: 9
Issue: 1
Year: 2008
Antigen stimulation of peripheral blood mononuclear cells from Mycobacterium bovis infected cattle yields evidence for a novel gene expression program
Author(s): Meade Kieran | Gormley Eamonn | O'Farrelly Cliona | Park Stephen | Costello Eamon | Keane Joseph | Zhao Yingdong | MacHugh David
Volume: 9
Issue: 1
Year: 2008
Characterization of expressed sequence tags from a full-length enriched cDNA library of Cryptomeria japonica male strobili
Author(s): Futamura Norihiro | Totoki Yasushi | Toyoda Atsushi | Igasaki Tomohiro | Nanjo Tokihiko | Seki Motoaki | Sakaki Yoshiyuki | Mari Adriano | Shinozaki Kazuo | Shinohara Kenji
Volume: 9
Issue: 1
Year: 2008
Differential SAGE analysis in Arabidopsis uncovers increased transcriptome complexity in response to low temperature
Author(s): Robinson Stephen | Parkin Isobel
Volume: 9
Issue: 1
Year: 2008
Promoter-sharing by different genes in human genome – CPNE1 and RBM12 gene pair as an example
Author(s): Yang Wanling | Ng Ping | Zhao Minghui | Wong Thomas | Yiu Siu-Ming | Lau Yu
Volume: 9
Issue: 1
Year: 2008
SCUD: Saccharomyces Cerevisiae Ubiquitination Database
Author(s): Lee Won-Chul | Lee Minho | Jung Jin Woo | Kim Kwang Pyo | Kim Dongsup
Volume: 9
Issue: 1
Year: 2008
CoGemiR: A comparative genomics microRNA database
Author(s): Maselli Vincenza | Di Bernardo Diego | Banfi Sandro
Volume: 9
Issue: 1
Year: 2008
Improved generation of rat gene knockouts by target-selected mutagenesis in mismatch repair-deficient animals
Author(s): van Boxtel Ruben | Toonen Pim | Verheul Mark | van Roekel Henk | Nijman Isaac | Guryev Victor | Cuppen Edwin
Volume: 9
Issue: 1
Year: 2008
Selection and mutation on microRNA target sequences during rice evolution
Author(s): Guo Xingyi | Gui Yijie | Wang Yu | Zhu Qian-Hao | Helliwell Chris | Fan Longjiang
Volume: 9
Issue: 1
Year: 2008
Haplotype inference from unphased SNP data in heterozygous polyploids based on SAT
Author(s): Neigenfind Jost | Gyetvai Gabor | Basekow Rico | Diehl Svenja | Achenbach Ute | Gebhardt Christiane | Selbig Joachim | Kersten Birgit
Volume: 9
Issue: 1
Year: 2008
A map of the class III region of the sheep major histocompatibilty complex
Author(s): Qin J | Mamotte C | Cockett NE | Wetherall JD | Groth DM
Volume: 9
Issue: 1
Year: 2008
Interspecies data mining to predict novel ING-protein interactions in human
Author(s): Gordon Paul | Soliman Mohamed | Bose Pinaki | Trinh Quang | Sensen Christoph | Riabowol Karl
Volume: 9
Issue: 1
Year: 2008
BOV – a web-based BLAST output visualization tool
Author(s): Gollapudi Rajesh | Revanna Kashi | Hemmerich Chris | Schaack Sarah | Dong Qunfeng
Volume: 9
Issue: 1
Year: 2008
Gene expression profiling in hepatic tissue of newly weaned pigs fed pharmacological zinc and phytase supplemented diets
Author(s): Martínez-Montemayor Michelle | Hill Gretchen | Raney Nancy | Rilington Valencia | Tempelman Robert | Link Jane | Wilkinson Christopher | Ramos Antonio | Ernst Catherine
Volume: 9
Issue: 1
Year: 2008
Global identification of bursicon-regulated genes in Drosophila melanogaster
Author(s): An Shiheng | Wang Songjie | Gilbert Lawrence | Beerntsen Brenda | Ellersieck Mark | Song Qisheng
Volume: 9
Issue: 1
Year: 2008
Evaluating the performance of Affymetrix SNP Array 6.0 platform with 400 Japanese individuals
Author(s): Nishida Nao | Koike Asako | Tajima Atsushi | Ogasawara Yuko | Ishibashi Yoshimi | Uehara Yasuka | Inoue Ituro | Tokunaga Katsushi
Volume: 9
Issue: 1
Year: 2008
Comparative genomics of small RNA regulatory pathway components in vector mosquitoes
Author(s): Campbell Corey | Black William | Hess Ann | Foy Brian
Volume: 9
Issue: 1
Year: 2008
The information highways of a biotechnological workhorse – signal transduction in Hypocrea jecorina
Author(s): Schmoll Monika
Volume: 9
Issue: 1
Year: 2008
Genome sequencing and analysis reveals possible determinants of Staphylococcus aureus nasal carriage
Author(s): Sivaraman Karthikeyan | Venkataraman Nitya | Tsai Jennifer | Dewell Scott | Cole Alexander
Volume: 9
Issue: 1
Year: 2008
Identification of transcripts involved in meiosis and follicle formation during ovine ovary development
Author(s): Baillet Adrienne | Mandon-Pépin Béatrice | Cabau Cédric | Poumerol Elodie | Pailhoux Eric | Cotinot Corinne
Volume: 9
Issue: 1
Year: 2008
The rules of gene expression in plants: Organ identity and gene body methylation are key factors for regulation of gene expression in Arabidopsis thaliana
Author(s): Aceituno Felipe | Moseyko Nick | Rhee Seung | Gutiérrez Rodrigo
Volume: 9
Issue: 1
Year: 2008
Molecular architecture of the fruit fly's airway epithelial immune system
Author(s): Wagner Christina | Isermann Kerstin | Fehrenbach Heinz | Roeder Thomas
Volume: 9
Issue: 1
Year: 2008
Microarray analysis of toxicogenomic effects of Ortho-phenylphenol in Staphylococcus aureus
Author(s): Jang Hyeung-Jin | Nde Chantal | Toghrol Freshteh | Bentley William
Volume: 9
Issue: 1
Year: 2008
A combination of LongSAGE with Solexa sequencing is well suited to explore the depth and the complexity of transcriptome
Author(s): Hanriot Lucie | Keime Céline | Gay Nadine | Faure Claudine | Dossat Carole | Wincker Patrick | Scoté-Blachon Céline | Peyron Christelle | Gandrillon Olivier
Volume: 9
Issue: 1
Year: 2008
Development of genomic resources for Citrus clementina: Characterization of three deep-coverage BAC libraries and analysis of 46,000 BAC end sequences
Author(s): Terol Javier | Naranjo M Angel | Ollitrault Patrick | Talon Manuel
Volume: 9
Issue: 1
Year: 2008
POEM, A 3-dimensional exon taxonomy and patterns in untranslated exons
Author(s): Knapp Keith | Chonka Ashley | Chen Yi-Ping
Volume: 9
Issue: 1
Year: 2008
The protein-phosphatome of the human malaria parasite Plasmodium falciparum
Author(s): Wilkes Jonathan | Doerig Christian
Volume: 9
Issue: 1
Year: 2008
Transcriptomic responses to 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) in liver: Comparison of rat and mouse
Author(s): Boutros Paul | Yan Rui | Moffat Ivy | Pohjanvirta Raimo | Okey Allan
Volume: 9
Issue: 1
Year: 2008
A novel reverse transduction adenoviral array for the functional analysis of shRNA libraries
Author(s): Oehmig Angelika | Klotzbücher Andrea | Thomas Maria | Weise Frank | Hagner Ursula | Brundiers Ralf | Waldherr Dirk | Lingnau Andreas | Knappik Achim | Kubbutat Michael | Joos Thomas | Volkmer Hansjürgen
Volume: 9
Issue: 1
Year: 2008
A human genome-wide library of local phylogeny predictions for whole-genome inference problems
Author(s): Sridhar Srinath | Schwartz Russell
Volume: 9
Issue: 1
Year: 2008
Identification of direct regulatory targets of the transcription factor Sox10 based on function and conservation
Author(s): Lee Kyung | Nam Seungyoon | Cho Eun-ah | Seong Ikjoo | Limb Jin-Kyung | Lee Sanghyuk | Kim Jaesang
Volume: 9
Issue: 1
Year: 2008
Transcriptomic analysis of the exit from dormancy of Aspergillus fumigatus conidia
Author(s): Lamarre Claude | Sokol Sergueï | Debeaupuis Jean-Paul | Henry Christine | Lacroix Céline | Glaser Philippe | Coppée Jean-Yves | François Jean-Marie | Latgé Jean-Paul
Volume: 9
Issue: 1
Year: 2008
Genome signature analysis of thermal virus metagenomes reveals Archaea and thermophilic signatures
Author(s): Pride David | Schoenfeld Thomas
Volume: 9
Issue: 1
Year: 2008
The genome of Aeromonas salmonicida subsp. salmonicida A449: insights into the evolution of a fish pathogen
Author(s): Reith Michael | Singh Rama | Curtis Bruce | Boyd Jessica | Bouevitch Anne | Kimball Jennifer | Munholland Janet | Murphy Colleen | Sarty Darren | Williams Jason | Nash John | Johnson Stewart | Brown Laura
Volume: 9
Issue: 1
Year: 2008
Analysis of the goldfish Carassius auratus olfactory epithelium transcriptome reveals the presence of numerous non-olfactory GPCR and putative receptors for progestin pheromones
Author(s): Kolmakov Nikolay | Kube Michael | Reinhardt Richard | Canario Adelino
Volume: 9
Issue: 1
Year: 2008
RNomics and Modomics in the halophilic archaea Haloferax volcanii: identification of RNA modification genes
Author(s): Grosjean Henri | Gaspin Christine | Marck Christian | Decatur Wayne | de Crécy-Lagard Valérie
Volume: 9
Issue: 1
Year: 2008
Analysis of wheat SAGE tags reveals evidence for widespread antisense transcription
Author(s): Poole Rebecca | Barker Gary | Werner Kay | Biggi Gaia | Coghill Jane | Gibbings J George | Berry Simon | Dunwell Jim | Edwards Keith
Volume: 9
Issue: 1
Year: 2008
Local and systemic gene expression responses of Atlantic salmon (Salmo salar L.) to infection with the salmon louse (Lepeophtheirus salmonis)
Author(s): Skugor Stanko | Glover Kevin | Nilsen Frank | Krasnov Aleksei
Volume: 9
Issue: 1
Year: 2008
PwRn1, a novel Ty3/gypsy-like retrotransposon of Paragonimus westermani: molecular characters and its differentially preserved mobile potential according to host chromosomal polyploidy
Author(s): Bae Young-An | Ahn Jong-Sook | Kim Seon-Hee | Rhyu Mun-Gan | Kong Yoon | Cho Seung-Yull
Volume: 9
Issue: 1
Year: 2008
Meta-analysis of genome-wide expression patterns associated with behavioral maturation in honey bees
Author(s): Adams Heather | Southey Bruce | Robinson Gene | Rodriguez-Zas Sandra
Volume: 9
Issue: 1
Year: 2008
The dual transcriptional regulator CysR in Corynebacterium glutamicum ATCC 13032 controls a subset of genes of the McbR regulon in response to the availability of sulphide acceptor molecules
Author(s): Rückert Christian | Milse Johanna | Albersmeier Andreas | Koch Daniel | Pühler Alfred | Kalinowski Jörn
Volume: 9
Issue: 1
Year: 2008
A MITE-based genotyping method to reveal hundreds of DNA polymorphisms in an animal genome after a few generations of artificial selection
Author(s): Bonin Aurélie | Paris Margot | Després Laurence | Tetreau Guillaume | David Jean-Philippe | Kilian Andrzej
Volume: 9
Issue: 1
Year: 2008
A conifer genomics resource of 200,000 spruce (Picea spp.) ESTs and 6,464 high-quality, sequence-finished full-length cDNAs for Sitka spruce (Picea sitchensis)
Author(s): Ralph Steven | Chun Hye | Kolosova Natalia | Cooper Dawn | Oddy Claire | Ritland Carol | Kirkpatrick Robert | Moore Richard | Barber Sarah | Holt Robert | Jones Steven | Marra Marco | Douglas Carl | Ritland Kermit | Bohlmann Jörg
Volume: 9
Issue: 1
Year: 2008
Comparative genomics of Geobacter chemotaxis genes reveals diverse signaling function
Author(s): Tran Hoa | Krushkal Julia | Antommattei Frances | Lovley Derek | Weis Robert
Volume: 9
Issue: 1
Year: 2008
Toxicogenomic response of Pseudomonas aeruginosa to ortho-phenylphenol
Author(s): Nde Chantal | Jang Hyeung-Jin | Toghrol Freshteh | Bentley William
Volume: 9
Issue: 1
Year: 2008
High-throughput cell-based screening reveals a role for ZNF131 as a repressor of ERalpha signaling
Author(s): Han Xiao | Guo Jinhai | Deng Weiwei | Zhang Chenying | Du Peige | Shi Taiping | Ma Dalong
Volume: 9
Issue: 1
Year: 2008
Improved coverage of cDNA-AFLP by sequential digestion of immobilized cDNA
Author(s): Weiberg Arne | Pöhler Dirk | Morgenstern Burkhard | Karlovsky Petr
Volume: 9
Issue: 1
Year: 2008
Species-specific regulation of PXR/CAR/ER-target genes in the mouse and rat liver elicited by o, p'-DDT
Author(s): Kiyosawa Naoki | Kwekel Joshua | Burgoon Lyle | Dere Edward | Williams Kurt | Tashiro Colleen | Chittim Brock | Zacharewski Timothy
Volume: 9
Issue: 1
Year: 2008
Disturbances in metabolic, transport and structural genes in experimental colonic inflammation in the rat: a longitudinal genomic analysis
Author(s): Martínez-Augustin Olga | Merlos Manel | Zarzuelo Antonio | Suárez María | de Medina Fermín
Volume: 9
Issue: 1
Year: 2008
Experimental analysis of oligonucleotide microarray design criteria to detect deletions by comparative genomic hybridization
Author(s): Flibotte Stephane | Moerman Donald
Volume: 9
Issue: 1
Year: 2008
Design and analysis of mismatch probes for long oligonucleotide microarrays
Author(s): Deng Ye | He Zhili | Van Nostrand Joy | Zhou Jizhong
Volume: 9
Issue: 1
Year: 2008
Adrenaline modulates the global transcriptional profile of Salmonella revealing a role in the antimicrobial peptide and oxidative stress resistance responses
Author(s): Karavolos MH | Spencer H | Bulmer DM | Thompson A | Winzer K | Williams P | Hinton JCD | Khan CM Anjam
Volume: 9
Issue: 1
Year: 2008
Characterization of ten novel Ty1/copia-like retrotransposon families of the grapevine genome
Author(s): Moisy Cédric | Garrison Keith | Meredith Carole | Pelsy Frédérique
Volume: 9
Issue: 1
Year: 2008
Genomics Research: World Survey of Public Funding
Author(s): Pohlhaus Jennifer | Cook-Deegan Robert
Volume: 9
Issue: 1
Year: 2008
Ploidy status and copy number aberrations in primary glioblastomas defined by integrated analysis of allelic ratios, signal ratios and loss of heterozygosity using 500K SNP Mapping Arrays
Author(s): Gardina Paul | Lo Ken | Lee Walter | Cowell John | Turpaz Yaron
Volume: 9
Issue: 1
Year: 2008
Empirical Bayes accomodation of batch-effects in microarray data using identical replicate reference samples: application to RNA expression profiling of blood from Duchenne muscular dystrophy patients
Author(s): Walker Wynn | Liao Isaac | Gilbert Donald | Wong Brenda | Pollard Katherine | McCulloch Charles | Lit Lisa | Sharp Frank
Volume: 9
Issue: 1
Year: 2008
Genome-wide identification, organization and phylogenetic analysis of Dicer-like, Argonaute and RNA-dependent RNA Polymerase gene families and their expression analysis during reproductive development and stress in rice
Author(s): Kapoor Meenu | Arora Rita | Lama Tenisha | Nijhawan Aashima | Khurana Jitendra | Tyagi Akhilesh | Kapoor Sanjay
Volume: 9
Issue: 1
Year: 2008
The conservation pattern of short linear motifs is highly correlated with the function of interacting protein domains
Author(s): Ren Siyuan | Yang Guang | He Youyu | Wang Yiguo | Li Yixue | Chen Zhengjun
Volume: 9
Issue: 1
Year: 2008
Identifying gene regulatory modules of heat shock response in yeast
Author(s): Wu Wei-Sheng | Li Wen-Hsiung
Volume: 9
Issue: 1
Year: 2008
Gene expression profiling of liver from dairy cows treated intra-mammary with lipopolysaccharide
Author(s): Jiang Li | Sørensen Peter | Røntved Christine | Vels Lotte | Ingvartsen Klaus
Volume: 9
Issue: 1
Year: 2008
A comparative computational analysis of nonautonomous Helitron elements between maize and rice
Author(s): Sweredoski Michael | DeRose-Wilson Leah | Gaut Brandon
Volume: 9
Issue: 1
Year: 2008
Complete mitochondrial DNA sequence of oyster Crassostrea hongkongensis-a case of "Tandem duplication-random loss" for genome rearrangement in Crassostrea?
Author(s): Yu Ziniu | Wei Zhengpeng | Kong Xiaoyu | Shi Wei
Volume: 9
Issue: 1
Year: 2008
Copy number variations (CNVs) identified in Korean individuals
Author(s): Kang Tae-Wook | Jeon Yeo-Jin | Jang Eunsu | Kim Hee-Jin | Kim Jeong-Hwan | Park Jong-Lyul | Lee Siwoo | Kim Yong | Kim Jong | Kim Seon-Young
Volume: 9
Issue: 1
Year: 2008
Prediction of Sinorhizobium meliloti sRNA genes and experimental detection in strain 2011
Author(s): Valverde Claudio | Livny Jonathan | Schlüter Jan-Philip | Reinkensmeier Jan | Becker Anke | Parisi Gustavo
Volume: 9
Issue: 1
Year: 2008
Organogenic nodule development in hop (Humulus lupulus L.): Transcript and metabolic responses
Author(s): Fortes Ana | Santos Filipa | Choi Young | Silva Marta | Figueiredo Andreia | Sousa Lisete | Pessoa Fernando | Santos Bartolomeu | Sebastiana Mónica | Palme Klaus | Malhó Rui | Verpoorte Rob | Pais Maria
Volume: 9
Issue: 1
Year: 2008
Cross-species comparison of biological themes and underlying genes on a global gene expression scale in a mouse model of colorectal liver metastasis and in clinical specimens
Author(s): Bandapalli Obul | Kahlert Christoph | Hellstern Victoria | Galindo Luis | Schirmacher Peter | Weitz Jürgen | Brand Karsten
Volume: 9
Issue: 1
Year: 2008
Splice-mediated Variants of Proteins (SpliVaP) – data and characterization of changes in signatures among protein isoforms due to alternative splicing
Author(s): Floris Matteo | Orsini Massimiliano | Thanaraj Thangavel
Volume: 9
Issue: 1
Year: 2008
Differential gene expression profiles are dependent upon method of peripheral blood collection and RNA isolation
Author(s): Asare Adam | Kolchinsky Svetlana | Gao Zhong | Wang Richard | Raddassi Khadir | Bourcier Katarzyna | Seyfert-Margolis Vicki
Volume: 9
Issue: 1
Year: 2008
The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae
Author(s): Gross Roy | Guzman Carlos | Sebaihia Mohammed | Martins dos Santos Vítor | Pieper Dietmar | Koebnik Ralf | Lechner Melanie | Bartels Daniela | Buhrmester Jens | Choudhuri Jomuna | Ebensen Thomas | Gaigalat Lars | Herrmann Stefanie | Khachane Amit | Larisch Christof | Link Stefanie | Linke Burkhard | Meyer Folker | Mormann Sascha | Nakunst Diana | Rückert Christian | Schneiker-Bekel Susanne | Schulze Kai | Vorhölter Frank-Jörg | Yevsa Tetyana | Engle Jacquelyn | Goldman William | Pühler Alfred | Göbel Ulf | Goesmann Alexander | Blöcker Helmut | Kaiser Olaf | Martinez-Arias Rosa
Volume: 9
Issue: 1
Year: 2008
DroID: the Drosophila Interactions Database, a comprehensive resource for annotated gene and protein interactions
Author(s): Yu Jingkai | Pacifico Svetlana | Liu Guozhen | Finley Russell
Volume: 9
Issue: 1
Year: 2008
Global analysis of gene expression changes during retinoic acid-induced growth arrest and differentiation of melanoma: comparison to differentially expressed genes in melanocytes vs melanoma
Author(s): Estler Mary | Boskovic Goran | Denvir James | Miles Sarah | Primerano Donald | Niles Richard
Volume: 9
Issue: 1
Year: 2008
Prediction of evolutionarily conserved interologs in Mus musculus
Author(s): Yellaboina Sailu | Dudekula Dawood | Ko Minoru
Volume: 9
Issue: 1
Year: 2008
Genomics and proteomics of immune modulatory effects of a butanol fraction of echinacea purpurea in human dendritic cells
Author(s): Wang Chien-Yu | Staniforth Vanisree | Chiao Ming-Tsang | Hou Chia-Chung | Wu Han-Ming | Yeh Kuo-Chen | Chen Chun-Houh | Hwang Pei-Ing | Wen Tuan-Nan | Shyur Lie-Fen | Yang Ning-Sun
Volume: 9
Issue: 1
Year: 2008
Evolution of the holozoan ribosome biogenesis regulon
Author(s): Brown Seth | Cole Michael | Erives Albert
Volume: 9
Issue: 1
Year: 2008
Using gene expression databases for classical trait QTL candidate gene discovery in the BXD recombinant inbred genetic reference population: Mouse forebrain weight
Author(s): Lu Lu | Wei Lai | Peirce Jeremy | Wang Xusheng | Zhou Jianhua | Homayouni Ramin | Williams Robert | Airey David
Volume: 9
Issue: 1
Year: 2008
Quality assessment parameters for EST-derived SNPs from catfish
Author(s): Wang Shaolin | Sha Zhenxia | Sonstegard Tad | Liu Hong | Xu Peng | Somridhivej Benjaporn | Peatman Eric | Kucuktas Huseyin | Liu Zhanjiang
Volume: 9
Issue: 1
Year: 2008
Analysis of Porcine Transcriptional Response to Salmonella enterica serovar Choleraesuis suggests novel targets of NFkappaB are activated in the Mesenteric Lymph Node
Author(s): Wang Yanfang | Couture Oliver | Qu Long | Uthe Jolita | Bearson Shawn | Kuhar Daniel | Lunney Joan | Nettleton Dan | Dekkers Jack | Tuggle Christopher
Volume: 9
Issue: 1
Year: 2008
NemaPath: online exploration of KEGG-based metabolic pathways for nematodes
Author(s): Wylie Todd | Martin John | Abubucker Sahar | Yin Yong | Messina David | Wang Zhengyuan | McCarter James | Mitreva Makedonka
Volume: 9
Issue: 1
Year: 2008
Analysis of the largest tandemly repeated DNA families in the human genome
Author(s): Warburton Peter | Hasson Dan | Guillem Flavia | Lescale Chloe | Jin Xiaoping | Abrusan Gyorgy
Volume: 9
Issue: 1
Year: 2008
Expression of the cytochrome P450s, CYP6P3 and CYP6M2 are significantly elevated in multiple pyrethroid resistant populations of Anopheles gambiae s.s. from Southern Benin and Nigeria
Author(s): Djouaka Rousseau | Bakare Adekunle | Coulibaly Ousmane | Akogbeto Martin | Ranson Hilary | Hemingway Janet | Strode Clare
Volume: 9
Issue: 1
Year: 2008
Comparative genomics of wild type yeast strains unveils important genome diversity
Author(s): Carreto Laura | Eiriz Maria | Gomes Ana | Pereira Patrícia | Schuller Dorit | Santos Manuel
Volume: 9
Issue: 1
Year: 2008
Gene expression profiling in chicken heterophils with Salmonella enteritidis stimulation using a chicken 44 K Agilent microarray
Author(s): Chiang Hsin-I | Swaggerty Christina | Kogut Michael | Dowd Scot | Li Xianyao | Pevzner Igal | Zhou Huaijun
Volume: 9
Issue: 1
Year: 2008
The transcriptomic signature of fasting murine liver
Author(s): Sokolović Milka | Sokolović Aleksandar | Wehkamp Diederik | van Themaat Emiel | de Waart Dirk | Gilhuijs-Pederson Lisa | Nikolsky Yuri | van Kampen Antoine | Hakvoort Theodorus | Lamers Wouter
Volume: 9
Issue: 1
Year: 2008
Enhanced cross-species utility of conserved microsatellite markers in shorebirds
Author(s): Küpper Clemens | Burke Terry | Székely Tamás | Dawson Deborah
Volume: 9
Issue: 1
Year: 2008
The complete mitochondrial genome of the sexual oribatid mite Steganacarus magnus: genome rearrangements and loss of tRNAs
Author(s): Domes Katja | Maraun Mark | Scheu Stefan | Cameron Stephen
Volume: 9
Issue: 1
Year: 2008
An optimized procedure for the design and evaluation of Ecotilling assays
Author(s): Coassin Stefan | Brandstätter Anita | Kronenberg Florian
Volume: 9
Issue: 1
Year: 2008
Preferred and avoided codon pairs in three domains of life
Author(s): Tats Age | Tenson Tanel | Remm Maido
Volume: 9
Issue: 1
Year: 2008
p53 induces distinct epigenetic states at its direct target promoters
Author(s): Vrba Lukas | Junk Damian | Novak Petr | Futscher Bernard
Volume: 9
Issue: 1
Year: 2008
Linking gene regulation and the exo-metabolome: A comparative transcriptomics approach to identify genes that impact on the production of volatile aroma compounds in yeast
Author(s): Rossouw Debra | Næs Tormod | Bauer Florian
Volume: 9
Issue: 1
Year: 2008
Prosecutor: parameter-free inference of gene function for prokaryotes using DNA microarray data, genomic context and multiple gene annotation sources
Author(s): Blom Evert | Breitling Rainer | Hofstede Klaas | Roerdink Jos | van Hijum Sacha | Kuipers Oscar
Volume: 9
Issue: 1
Year: 2008
Comparative analysis of the time-dependent functional and molecular changes in spinal cord degeneration induced by the G93A SOD1 gene mutation and by mechanical compression
Author(s): Malaspina Andrea | Jokic Natasa | Huang Wenlong | Priestley John
Volume: 9
Issue: 1
Year: 2008
Gene Expression and Isoform Variation Analysis using Affymetrix Exon Arrays
Author(s): Bemmo Amandine | Benovoy David | Kwan Tony | Gaffney Daniel | Jensen Roderick | Majewski Jacek
Volume: 9
Issue: 1
Year: 2008
Low-pass shotgun sequencing of the barley genome facilitates rapid identification of genes, conserved non-coding sequences and novel repeats
Author(s): Wicker Thomas | Narechania Apurva | Sabot Francois | Stein Joshua | Vu Giang | Graner Andreas | Ware Doreen | Stein Nils
Volume: 9
Issue: 1
Year: 2008
Evolution of conserved secondary structures and their function in transcriptional regulation networks
Author(s): Xie Hai-Bing | Irwin David | Zhang Ya-Ping
Volume: 9
Issue: 1
Year: 2008
Isolation, characterization and comparison of Atlantic and Chinook salmon growth hormone 1 and 2
Author(s): von Schalburg Kristian | Yazawa Ryosuke | de Boer Johan | Lubieniecki Krzysztof | Goh Benjamin | Straub Christopher | Beetz-Sargent Marianne | Robb Adrienne | Davidson William | Devlin Robert | Koop Ben
Volume: 9
Issue: 1
Year: 2008
Retrocopy contributions to the evolution of the human genome
Author(s): Baertsch Robert | Diekhans Mark | Kent W James | Haussler David | Brosius Jürgen
Volume: 9
Issue: 1
Year: 2008
BioVenn – a web application for the comparison and visualization of biological lists using area-proportional Venn diagrams
Author(s): Hulsen Tim | de Vlieg Jacob | Alkema Wynand
Volume: 9
Issue: 1
Year: 2008
Transcriptional response of Mexican axolotls to Ambystoma tigrinum virus (ATV) infection
Author(s): Cotter Jennifer | Storfer Andrew | Page Robert | Beachy Christopher | Voss S Randal
Volume: 9
Issue: 1
Year: 2008
In silico identification and molecular characterization of genes predominantly expressed in the fish oocyte
Author(s): Bobe Julien | Nguyen Thaovi | Mahé Sophie | Monget Philippe
Volume: 9
Issue: 1
Year: 2008
Genomic plasticity of the immune-related Mhc class I B region in macaque species
Author(s): Bonhomme Maxime | Doxiadis Gaby | Heijmans Corrine | Vervoort Virginie | Otting Nel | Bontrop Ronald | Crouau-Roy Brigitte
Volume: 9
Issue: 1
Year: 2008
RAId_DbS: mass-spectrometry based peptide identification web server with knowledge integration
Author(s): Alves Gelio | Ogurtsov Aleksey | Yu Yi-Kuo
Volume: 9
Issue: 1
Year: 2008
Microarray analysis of Foxa2 mutant mouse embryos reveals novel gene expression and inductive roles for the gastrula organizer and its derivatives
Author(s): Tamplin Owen | Kinzel Doris | Cox Brian | Bell Christine | Rossant Janet | Lickert Heiko
Volume: 9
Issue: 1
Year: 2008
Transcriptome analysis identifies novel responses and potential regulatory genes involved in seasonal dormancy transitions of leafy spurge (Euphorbia esula L.)
Author(s): Horvath David | Chao Wun | Suttle Jeffrey | Thimmapuram Jyothi | Anderson James
Volume: 9
Issue: 1
Year: 2008
Genome-wide survey of prokaryotic serine proteases: Analysis of distribution and domain architectures of five serine protease families in prokaryotes
Author(s): Tripathi Lokesh | Sowdhamini R
Volume: 9
Issue: 1
Year: 2008
The prediction of protein-protein interaction networks in rice blast fungus
Author(s): He Fei | Zhang Yan | Chen Hao | Zhang Ziding | Peng You-Liang
Volume: 9
Issue: 1
Year: 2008
Matching curated genome databases: a non trivial task
Author(s): Descorps-Declère Stéphane | Barba Matthieu | Labedan Bernard
Volume: 9
Issue: 1
Year: 2008
A systematic approach to understand the mechanism of action of the bisthiazolium compound T4 on the human malaria parasite, Plasmodium falciparum
Author(s): Le Roch Karine | Johnson Jeffrey | Ahiboh Hugues | Chung Duk-Won | Prudhomme Jacques | Plouffe David | Henson Kerstin | Zhou Yingyao | Witola William | Yates John | Mamoun Choukri | Winzeler Elizabeth | Vial Henri
Volume: 9
Issue: 1
Year: 2008
In silico microarray probe design for diagnosis of multiple pathogens
Author(s): Vijaya Satya Ravi | Zavaljevski Nela | Kumar Kamal | Bode Elizabeth | Padilla Susana | Wasieloski Leonard | Geyer Jeanne | Reifman Jaques
Volume: 9
Issue: 1
Year: 2008
Analyses of expressed sequence tags from the maize foliar pathogen Cercospora zeae-maydis identify novel genes expressed during vegetative, infectious, and reproductive growth
Author(s): Bluhm Burton | Dhillon Braham | Lindquist Erika | Kema Gert | Goodwin Stephen | Dunkle Larry
Volume: 9
Issue: 1
Year: 2008
A new strategy for faster urinary biomarkers identification by Nano-LC-MALDI-TOF/TOF mass spectrometry
Author(s): Benkali K | Marquet P | Rérolle JP | Le Meur Y | Gastinel LN
Volume: 9
Issue: 1
Year: 2008
Prioritizing genes of potential relevance to diseases affected by sex hormones: an example of Myasthenia Gravis
Author(s): Kaur Mandeep | Schmeier Sebastian | MacPherson Cameron | Hofmann Oliver | Hide Winston | Taylor Stephen | Willcox Nick | Bajic Vladimir
Volume: 9
Issue: 1
Year: 2008
Chemical-genetic profile analysis in yeast suggests that a previously uncharacterized open reading frame, YBR261C, affects protein synthesis
Author(s): Alamgir Md | Eroukova Veronika | Jessulat Matthew | Xu Jianhua | Golshani Ashkan
Volume: 9
Issue: 1
Year: 2008
Histone deacetylase inhibitors: A new mode for inhibition of cholesterol metabolism
Author(s): Chittur Sridar | Sangster-Guity Niquiche | McCormick Paulette
Volume: 9
Issue: 1
Year: 2008
Genomic islands from five strains of Burkholderia pseudomallei
Author(s): Tuanyok Apichai | Leadem Benjamin | Auerbach Raymond | Beckstrom-Sternberg Stephen | Beckstrom-Sternberg James | Mayo Mark | Wuthiekanun Vanaporn | Brettin Thomas | Nierman William | Peacock Sharon | Currie Bart | Wagner David | Keim Paul
Volume: 9
Issue: 1
Year: 2008
New insights into the origin of the B genome of hexaploid wheat: Evolutionary relationships at the SPA genomic region with the S genome of the diploid relative Aegilops speltoides
Author(s): Salse Jérome | Chagué Véronique | Bolot Stéphanie | Magdelenat Ghislaine | Huneau Cécile | Pont Caroline | Belcram Harry | Couloux Arnaud | Gardais Soazic | Evrard Aurélie | Segurens Béatrice | Charles Mathieu | Ravel Catherine | Samain Sylvie | Charmet Gilles | Boudet Nathalie | Chalhoub Boulos
Volume: 9
Issue: 1
Year: 2008
LTR retrotransposons reveal recent extensive inter-subspecies nonreciprocal recombination in Asian cultivated rice
Author(s): Wang Hao | Xu Zhao | Yu Hongjie
Volume: 9
Issue: 1
Year: 2008
Differential expression profiling of components associated with exoskeletal hardening in crustaceans
Author(s): Kuballa Anna | Elizur Abigail
Volume: 9
Issue: 1
Year: 2008
Properties of non-coding DNA and identification of putative cis-regulatory elements in Theileria parva
Author(s): Guo Xiang | Silva Joana
Volume: 9
Issue: 1
Year: 2008
Genomic resources for a commercial flatfish, the Senegalese sole (Solea senegalensis): EST sequencing, oligo microarray design, and development of the Soleamold bioinformatic platform
Author(s): Cerdà Joan | Mercadé Jaume | Lozano Juan | Manchado Manuel | Tingaud-Sequeira Angèle | Astola Antonio | Infante Carlos | Halm Silke | Viñas Jordi | Castellana Barbara | Asensio Esther | Cañavate Pedro | Martínez-Rodríguez Gonzalo | Piferrer Francesc | Planas Josep | Prat Francesc | Yúfera Manuel | Durany Olga | Subirada Francesc | Rosell Elisabet | Maes Tamara
Volume: 9
Issue: 1
Year: 2008
mtDNA depletion confers specific gene expression profiles in human cells grown in culture and in xenograft
Author(s): Magda Darren | Lecane Philip | Prescott Julia | Thiemann Patricia | Ma Xuan | Dranchak Patricia | Toleno Donna | Ramaswamy Krishna | Siegmund Kimberly | Hacia Joseph
Volume: 9
Issue: 1
Year: 2008
Analysis of the Pythium ultimum transcriptome using Sanger and Pyrosequencing approaches
Author(s): Cheung Foo | Win Joe | Lang Jillian | Hamilton John | Vuong Hue | Leach Jan | Kamoun Sophien | André Lévesque C | Tisserat Ned | Buell C Robin
Volume: 9
Issue: 1
Year: 2008
Genome-wide and expression analysis of protein phosphatase 2C in rice and Arabidopsis
Author(s): Xue Tongtong | Wang Dong | Zhang Shizhong | Ehlting Juergen | Ni Fei | Jakab Stephen | Zheng Chengchao | Zhong Yuan
Volume: 9
Issue: 1
Year: 2008
Refined annotation and assembly of the Tetrahymena thermophila genome sequence through EST analysis, comparative genomic hybridization, and targeted gap closure
Author(s): Coyne Robert | Thiagarajan Mathangi | Jones Kristie | Wortman Jennifer | Tallon Luke | Haas Brian | Cassidy-Hanley Donna | Wiley Emily | Smith Joshua | Collins Kathleen | Lee Suzanne | Couvillion Mary | Liu Yifan | Garg Jyoti | Pearlman Ronald | Hamilton Eileen | Orias Eduardo | Eisen Jonathan | Methé Barbara
Volume: 9
Issue: 1
Year: 2008
Changes induced by dietary energy intake and divergent selection for muscle fat content in rainbow trout (Oncorhynchus mykiss), assessed by transcriptome and proteome analysis of the liver
Author(s): Kolditz Catherine-Ines | Paboeuf Gilles | Borthaire Maïena | Esquerré Diane | SanCristobal Magali | Lefèvre Florence | Médale Françoise
Volume: 9
Issue: 1
Year: 2008
A genome-wide Asian genetic map and ethnic comparison: The GENDISCAN study
Author(s): Ju Young | Park Hansoo | Lee Mi-Kyeong | Kim Jong-Il | Sung Joohon | Cho Sung-Il | Seo Jeong-Sun
Volume: 9
Issue: 1
Year: 2008
Genome plasticity of Vibrio parahaemolyticus: microevolution of the 'pandemic group'
Author(s): Han Haihong | Wong Hin-chung | Kan Biao | Guo Zhaobiao | Zeng Xiaotao | Yin Shengjun | Liu Xiumei | Yang Ruifu | Zhou Dongsheng
Volume: 9
Issue: 1
Year: 2008
A novel custom high density-comparative genomic hybridization array detects common rearrangements as well as deep intronic mutations in dystrophinopathies
Author(s): Bovolenta Matteo | Neri Marcella | Fini Sergio | Fabris Marina | Trabanelli Cecilia | Venturoli Anna | Martoni Elena | Bassi Elena | Spitali Pietro | Brioschi Simona | Falzarano Maria | Rimessi Paola | Ciccone Roberto | Ashton Emma | McCauley Joanne | Yau Shu | Abbs Stephen | Muntoni Francesco | Merlini Luciano | Gualandi Francesca | Ferlini Alessandra
Volume: 9
Issue: 1
Year: 2008
Absolute quantification of the budding yeast transcriptome by means of competitive PCR between genomic and complementary DNAs
Author(s): Miura Fumihito | Kawaguchi Noriko | Yoshida Mikio | Uematsu Chihiro | Kito Keiji | Sakaki Yoshiyuki | Ito Takashi
Volume: 9
Issue: 1
Year: 2008
Comparative genomic analysis of carbon and nitrogen assimilation mechanisms in three indigenous bioleaching bacteria: predictions and validations
Author(s): Levicán Gloria | Ugalde Juan | Ehrenfeld Nicole | Maass Alejandro | Parada Pilar
Volume: 9
Issue: 1
Year: 2008
Microarray analysis identifies candidate genes for key roles in coral development
Author(s): Grasso Lauretta | Maindonald John | Rudd Stephen | Hayward David | Saint Robert | Miller David | Ball Eldon
Volume: 9
Issue: 1
Year: 2008
Transcriptome analysis of mammary epithelial subpopulations identifies novel determinants of lineage commitment and cell fate
Author(s): Kendrick Howard | Regan Joseph | Magnay Fiona-Ann | Grigoriadis Anita | Mitsopoulos Costas | Zvelebil Marketa | Smalley Matthew
Volume: 9
Issue: 1
Year: 2008
Transcriptome profiling of the feeding-to-fasting transition in chicken liver
Author(s): Désert Colette | Duclos Michel | Blavy Pierre | Lecerf Frédéric | Moreews François | Klopp Christophe | Aubry Marc | Herault Frédéric | Le Roy Pascale | Berri Cécile | Douaire Madeleine | Diot Christian | Lagarrigue Sandrine
Volume: 9
Issue: 1
Year: 2008
Methylation-sensitive linking libraries enhance gene-enriched sequencing of complex genomes and map DNA methylation domains
Author(s): Nelson William | Luo Meizhong | Ma Jianxin | Estep Matt | Estill James | He Ruifeng | Talag Jayson | Sisneros Nicholas | Kudrna David | Kim HyeRan | Ammiraju Jetty | Collura Kristi | Bharti Arvind | Messing Joachim | Wing Rod | SanMiguel Phillip | Bennetzen Jeffrey | Soderlund Carol
Volume: 9
Issue: 1
Year: 2008
Sequence divergence of Mus spretus and Mus musculus across a skin cancer susceptibility locus
Author(s): Mahler Kimberly | Fleming Jessica | Dworkin Amy | Gladman Nicholas | Cho Hee-Yeon | Mao Jian-Hua | Balmain Allan | Toland Amanda
Volume: 9
Issue: 1
Year: 2008
A salmonid EST genomic study: genes, duplications, phylogeny and microarrays
Author(s): Koop Ben | von Schalburg Kristian | Leong Jong | Walker Neil | Lieph Ryan | Cooper Glenn | Robb Adrienne | Beetz-Sargent Marianne | Holt Robert | Moore Richard | Brahmbhatt Sonal | Rosner Jamie | Rexroad Caird | McGowan Colin | Davidson William
Volume: 9
Issue: 1
Year: 2008
SuperSAGE: the drought stress-responsive transcriptome of chickpea roots
Author(s): Molina Carlos | Rotter Björn | Horres Ralf | Udupa Sripada | Besser Bert | Bellarmino Luis | Baum Michael | Matsumura Hideo | Terauchi Ryohei | Kahl Günter | Winter Peter
Volume: 9
Issue: 1
Year: 2008
Sequence space coverage, entropy of genomes and the potential to detect non-human DNA in human samples
Author(s): Liu Zhandong | Venkatesh Santosh | Maley Carlo
Volume: 9
Issue: 1
Year: 2008
Combining gene expression, demographic and clinical data in modeling disease: a case study of bipolar disorder and schizophrenia
Author(s): Struyf Jan | Dobrin Seth | Page David
Volume: 9
Issue: 1
Year: 2008
Insulin-like growth factor-1 coordinately induces the expression of fatty acid and cholesterol biosynthetic genes in murine C2C12 myoblasts
Author(s): Bhasker C Ramana | Friedmann Theodore
Volume: 9
Issue: 1
Year: 2008
G-spots cause incorrect expression measurement in Affymetrix microarrays
Author(s): Upton Graham | Langdon William | Harrison Andrew
Volume: 9
Issue: 1
Year: 2008
Genomic sequence and activity of KS10, a transposable phage of the Burkholderia cepacia complex
Author(s): Goudie Amanda | Lynch Karlene | Seed Kimberley | Stothard Paul | Shrivastava Savita | Wishart David | Dennis Jonathan
Volume: 9
Issue: 1
Year: 2008
The genome sequence of the fish pathogen Aliivibrio salmonicida strain LFI1238 shows extensive evidence of gene decay
Author(s): Hjerde Erik | Lorentzen Marit | Holden Matthew | Seeger Kathy | Paulsen Steinar | Bason Nathalie | Churcher Carol | Harris David | Norbertczak Halina | Quail Michael | Sanders Suzanne | Thurston Scott | Parkhill Julian | Willassen Nils | Thomson Nicholas
Volume: 9
Issue: 1
Year: 2008
Transgenic increases in seed oil content are associated with the differential expression of novel Brassica-specific transcripts
Author(s): Sharma Nirmala | Anderson Maureen | Kumar Arvind | Zhang Yan | Giblin E Michael | Abrams Suzanne | Zaharia L Irina | Taylor David | Fobert Pierre
Volume: 9
Issue: 1
Year: 2008
Global transcriptional profiling reveals Streptococcus agalactiae genes controlled by the MtaR transcription factor
Author(s): Bryan Joshua | Liles Roxanne | Cvek Urska | Trutschl Marjan | Shelver Daniel
Volume: 9
Issue: 1
Year: 2008
Buffering by gene duplicates: an analysis of molecular correlates and evolutionary conservation
Author(s): Hannay Kevin | Marcotte Edward | Vogel Christine
Volume: 9
Issue: 1
Year: 2008
Transcriptional response of rat frontal cortex following acute In Vivo exposure to the pyrethroid insecticides permethrin and deltamethrin
Author(s): Harrill Joshua | Li Zhen | Wright Fred | Radio Nicholas | Mundy William | Tornero-Velez Rogelio | Crofton Kevin
Volume: 9
Issue: 1
Year: 2008
Use of pyrosequencing and DNA barcodes to monitor variations in Firmicutes and Bacteroidetes communities in the gut microbiota of obese humans
Author(s): Armougom Fabrice | Raoult Didier
Volume: 9
Issue: 1
Year: 2008
High quality draft sequences for prokaryotic genomes using a mix of new sequencing technologies
Author(s): Aury Jean-Marc | Cruaud Corinne | Barbe Valérie | Rogier Odile | Mangenot Sophie | Samson Gaelle | Poulain Julie | Anthouard Véronique | Scarpelli Claude | Artiguenave François | Wincker Patrick
Volume: 9
Issue: 1
Year: 2008
A first generation whole genome RH map of the river buffalo with comparison to domestic cattle
Author(s): Amaral M Elisabete | Grant Jason | Riggs Penny | Stafuzza Nedenia | Filho Edson | Goldammer Tom | Weikard Rosemarie | Brunner Ronald | Kochan Kelli | Greco Anthony | Jeong Jooha | Cai Zhipeng | Lin Guohui | Prasad Aparna | Kumar Satish | Saradhi G Pardha | Mathew Boby | Kumar M Aravind | Miziara Melissa | Mariani Paola | Caetano Alexandre | Galvão Stephan | Tantia Madhu | Vijh Ramesh | Mishra Bina | Kumar ST Bharani | Pelai Vanderlei | Santana Andre | Fornitano Larissa | Jones Brittany | Tonhati Humberto | Moore Stephen | Stothard Paul | Womack James
Volume: 9
Issue: 1
Year: 2008
Establishing an adjusted p-value threshold to control the family-wide type 1 error in genome wide association studies
Author(s): Duggal Priya | Gillanders Elizabeth | Holmes Taura | Bailey-Wilson Joan
Volume: 9
Issue: 1
Year: 2008
Application of dissociation curve analysis to radiation hybrid panel marker scoring: generation of a map of river buffalo (B. bubalis) chromosome 20
Author(s): Kochan Kelli | Amaral M Elisabete | Agarwala Richa | Schäffer Alejandro | Riggs Penny
Volume: 9
Issue: 1
Year: 2008
High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families
Author(s): Szittya Gyorgy | Moxon Simon | Santos Dulce | Jing Runchun | Fevereiro Manuel | Moulton Vincent | Dalmay Tamas
Volume: 9
Issue: 1
Year: 2008
Acidithiobacillus ferrooxidans metabolism: from genome sequence to industrial applications
Author(s): Valdés Jorge | Pedroso Inti | Quatrini Raquel | Dodson Robert | Tettelin Herve | Blake Robert | Eisen Jonathan | Holmes David
Volume: 9
Issue: 1
Year: 2008
Genomic characterization of putative allergen genes in peach/almond and their synteny with apple
Author(s): Chen Lin | Zhang Shuiming | Illa Eudald | Song Lijuan | Wu Shandong | Howad Werner | Arús Pere | Weg Eric | Chen Kunsong | Gao Zhongshan
Volume: 9
Issue: 1
Year: 2008
A cross-species transcriptomics approach to identify genes involved in leaf development
Author(s): Street Nathaniel | Sjödin Andreas | Bylesjö Max | Gustafsson Petter | Trygg Johan | Jansson Stefan
Volume: 9
Issue: 1
Year: 2008
EST analysis of male accessory glands from Heliconius butterflies with divergent mating systems
Author(s): Walters James | Harrison Richard
Volume: 9
Issue: 1
Year: 2008
Insights into the genome sequence of a free-living Kinetoplastid: Bodo saltans (Kinetoplastida: Euglenozoa)
Author(s): Jackson Andrew | Quail Michael | Berriman Matthew
Volume: 9
Issue: 1
Year: 2008
Mononucleotide repeats are asymmetrically distributed in fungal genes
Author(s): van Passel Mark | de Graaff Leo
Volume: 9
Issue: 1
Year: 2008
Evaluating genome-wide DNA methylation changes in mice by Methylation Specific Digital Karyotyping
Author(s): Boon Kathy | Tomfohr John | Bailey Nathaniel | Garantziotis Stavros | Li Zhuowei | Brass David | Maruoka Shuichiro | Hollingsworth John | Schwartz David
Volume: 9
Issue: 1
Year: 2008
Architecture of thermal adaptation in an Exiguobacterium sibiricum strain isolated from 3 million year old permafrost: A genome and transcriptome approach
Author(s): Rodrigues Debora | Ivanova Natalia | He Zhili | Huebner Marianne | Zhou Jizhong | Tiedje James
Volume: 9
Issue: 1
Year: 2008
Multiple genome alignment for identifying the core structure among moderately related microbial genomes
Author(s): Uchiyama Ikuo
Volume: 9
Issue: 1
Year: 2008